GTDB-Tk

note

Assigns objective taxonomic classifications to bacterial and archaeal genomes.

https://ecogenomics.github.io/GTDBTk/index.html

The module parses summary.tsv outputs from GTDB-Tk's classify.py and classify_wf.py.

The module only works for version >= 2.4.0 because column names changed.

classify.py and classify_wf.py are used to determine the taxonomic classification of input genomes.

File search patterns

gtdbtk:
  contents: "user_genome\tclassification\tclosest_genome_reference\tclosest_genome_reference_radius\t\
    closest_genome_taxonomy\tclosest_genome_ani"
  num_lines: 10